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11 – 20 of 253 publications

No. Subject
11 journalArticle

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku Özbulak, Hyun Jung Lee, Jasper Zuallaert (UGent) , Wesley De Neve (UGent) , Stephen Depuydt (UGent) and Joris Vankerschaver (UGent)
  • 2023
  • BIOINFORMATICS. 39(6).
12 journalArticle

Know your self-supervised learning : a survey on image-based generative and discriminative training

Utku Özbulak, Hyun Jung Lee (UGent) , Beril Boga, Esla Timothy Anzaku, Homin Park (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Joris Vankerschaver (UGent)
  • 2023
  • TRANSACTIONS ON MACHINE LEARNING RESEARCH.
13 journalArticle

CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Homin Park (UGent) , Jong Bum Won, Yunseol Park (UGent) , Esla Timothy Anzaku (UGent) , Joris Vankerschaver (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Hyunjin Shim
  • 2023
  • BMC BIOINFORMATICS. 24(1).
14 journalArticle

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku Özbulak, Hyun Jung Lee, Jasper Zuallaert (UGent) , Wesley De Neve (UGent) , Stephen Depuydt (UGent) and Joris Vankerschaver (UGent)
  • 2023
  • BIOINFORMATICS. 39(6).
15 journalArticle

Tryp : a dataset of microscopy images of unstained thick blood smears for trypanosome detection

Esla Timothy Anzaku, Mohammed Aliy Mohammed (UGent) , Utku Özbulak, Jongbum Won, Hyesoo Hong, Janarthanan Krishnamoorthy, Sofie Van Hoecke (UGent) , Stefan Magez (UGent) , Arnout Van Messem (UGent) and Wesley De Neve (UGent)
  • 2023
  • SCIENTIFIC DATA. 10(1).
16 journalArticle

Know your self-supervised learning : a survey on image-based generative and discriminative training

Utku Özbulak, Hyun Jung Lee (UGent) , Beril Boga, Esla Timothy Anzaku, Homin Park (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Joris Vankerschaver (UGent)
  • 2023
  • TRANSACTIONS ON MACHINE LEARNING RESEARCH.
17 journalArticle

Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

Manvel Gasparyan (UGent) , Arnout Van Messem (UGent) and Shodhan Rao (UGent)
  • 2023
  • INTERNATIONAL JOURNAL OF CONTROL. 96(2). p.392-407
18 journalArticle

Parameter estimation for kinetic models of chemical reaction networks from partial experimental data of species’ concentrations

Manvel Gasparyan and Shodhan Rao (UGent)
  • 2023
  • BIOENGINEERING-BASEL. 10(9).
19 dissertation

Prevalence of adversarial examples in neural networks : attacks, defenses, and opportunities

Utku Özbulak
  • 2022
  • PhD Thesis
20 journalArticle

Rethinking protein drug design with highly accurate structure prediction of anti-CRISPR proteins

Homin Park (UGent) , Yunseol Park, Joris Vankerschaver (UGent) , Arnout Van Messem (UGent) , Wesley De Neve (UGent) and Hyunjin Shim
  • 2022
  • PHARMACEUTICALS. 15(3).